| Name | Version | Summary | date |
| pepflex |
0.0.1 |
A modular framework for in silico peptide screening and evolution. |
2025-07-13 17:41:22 |
| cogent3 |
2025.7.10a2 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-11 11:40:13 |
| cogent3-h5seqs |
0.5.0 |
HDF5 storage driver for cogent3 sequence collections |
2025-07-10 06:30:06 |
| spyceATAC |
0.0.4 |
sPYce is a Python package for the cross-species integration of single-nucleus ATAC-seq data (snATAC-seq) |
2025-07-09 14:19:12 |
| phenopype |
6.1.0 |
A phenotyping pipeline for python |
2025-02-03 23:13:53 |
| phenopype-plugins |
0.2.0 |
AI and other plugins for phenopype |
2025-02-03 03:17:34 |
| virusrecom |
1.3.7 |
An information-theory-based method for recombination detection of viral lineages. |
2025-01-21 13:04:51 |
| phylim |
2025.1.12 |
A library for checking the limits of phylogenetic tree estimation. |
2025-01-12 02:03:20 |
| diverse-seq |
2024.12.26a1 |
diverse_seq: a tool for sampling diverse biological sequences |
2024-12-26 03:33:53 |
| gadma |
2.0.2 |
A tool for easy-to-use demographic inference |
2024-11-06 16:25:51 |
| ensembl-tui |
0.1a9 |
Ensembl terminal user interface tools |
2024-10-04 22:38:31 |
| evogression |
0.11.0 |
Evolutionary Regression |
2024-09-27 05:06:51 |
| mutation_motif |
2024.9.22 |
mutation_motif, software for naalyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed/27974498 |
2024-09-22 02:16:54 |
| cogent3-ete3 |
2024.8.22a6 |
cogent3 plugin for ete3 |
2024-09-17 06:36:17 |
| ensembl_tui |
0.1a3 |
Ensembl cli tools |
2024-09-02 22:20:43 |
| cometspy |
0.5.2 |
The Python interface to COMETS |
2024-06-26 11:26:30 |
| taxonerd |
1.5.4 |
A Python package and CLI tool based on spaCy for detecting mentions of taxonomic entities in text |
2024-06-12 08:11:47 |
| ervdetective |
1.0.8 |
An efficient pipeline for identification and annotation of endogenous retroviruses (ERVs) |
2024-06-02 10:00:05 |
| rllte-core |
1.0.1 |
Long-Term Evolution Project of Reinforcement Learning |
2024-05-25 16:44:55 |
| multi-agent-decision |
0.3 |
Simulates the actions which agents take under multi-agent systems and social networks |
2024-04-14 04:00:08 |