| Name | Version | Summary | date |
| ncbi-tree |
1.0.1 |
ncbi-tree is an open source, cross-platform command-line tool for downloading the latest NCBI taxonomy database and converting it to Newick tree format (.tre), with optional plain-text visualization (.txt) |
2025-10-21 21:51:16 |
| cogent3 |
2025.9.8a5 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-10-20 23:32:58 |
| py-ste |
1.1.1 |
A Python package for evolving unitaries and states under the Schrödinger equation using first-order Suzuki-Trotter and computing switching functions. |
2025-10-19 22:47:17 |
| HOPPET |
2.0.1 |
HOPPET: A Higher Order Perturbative Parton Evolution Toolkit |
2025-10-18 09:49:39 |
| cogent3-h5seqs |
0.7.1 |
HDF5 storage driver for cogent3 sequence collections |
2025-10-10 05:46:35 |
| agix |
1.6.0 |
Experimental AGI framework with neuro-symbolic reasoning, evolutionary agents and plastic learning |
2025-09-14 17:28:09 |
| diverse-seq |
2025.9.11 |
diverse_seq: a tool for sampling diverse biological sequences |
2025-09-10 22:52:40 |
| radiate |
0.0.7 |
A fast and flexible evolution engine for implementing artificial evolution and genetic programming techniques. |
2025-09-04 23:46:06 |
| evosphere |
1.0.0 |
The Evolutionary Bio-Compiler: A living engine for programming biology through evolution itself |
2025-08-31 14:13:16 |
| cometspy |
0.5.4 |
The Python interface to COMETS |
2025-08-27 19:47:44 |
| phylim |
2025.8.27 |
A library for checking the limits of phylogenetic tree estimation. |
2025-08-27 06:25:34 |
| mdeq |
2025.6.30 |
mdeq: mutation disequilibrium analysis tools. |
2025-08-13 07:11:57 |
| virheat |
0.7.6 |
virHEAT creates a heatmap from vcf files and maps positions on to a reference genome. |
2025-08-12 12:41:10 |
| ensembl-tui |
0.4.3 |
Ensembl terminal user interface tools |
2025-08-12 05:30:48 |
| iceberg-evolve |
1.0.1 |
Schema diffing and evolution tool for Iceberg and beyond. |
2025-08-07 08:28:21 |
| x-transformers-rl |
0.0.98 |
X-Transformer for RL |
2025-08-02 17:55:29 |
| geo-optimizer |
1.1.0 |
GEO: Genetic & Evolutionary Optimizer — A Neural Network Training framework. |
2025-07-25 12:36:18 |
| qmemetic-ai |
1.1.2 |
Quantum-inspired AI system for evolving, mutating, and entangling memes across users, systems, and timelines |
2025-07-21 07:29:00 |
| mutation-motif |
2025.7.17 |
mutation_motif, software for analyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed/27974498 |
2025-07-16 23:25:09 |
| pepflex |
0.0.1 |
A modular framework for in silico peptide screening and evolution. |
2025-07-13 17:41:22 |